michieitel

Hi! I just ran again and printed the error log. It says: > main::main::postProcessSearch: FastaDB::substr - Error index out of bounds! Full log: > ``` > Warning...unknown stuff < >...

Hi Robert! Same issue for me even with the PAF file running on the GPU accelerated racon v1.4.3. With this command ... ``` racon -t 20 -m 8 -x -6...

roger that. thanks

same with v. 1.4.9: > Using 2 GPU(s) to perform polishing > Initialize device 0 > Initialize device 1 > [CUDAPolisher] Constructed. > [racon::Polisher::initialize] loaded target sequences 0.350697 s >...

Yes I deleted this comment again since I was again playing with sth. Let me finish the current test. If that fails I will replace the line as suggested...

Well. How to say.... super embarrassing mistake on my side. The alignment file was the problem. Instead of mapping reads to the assembly I mapped them against themselves. So stupid...