Michelle Berry comments

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                                            Michelle Berry

changing minDR and maxDR give unexpected output

Hi Connor, Thanks for looking into these issues. I'm glad that the duplicate DR groups bug has now been fixed. It seems like there should be separate arguments for the...

Temporal Autocorrelation, and other Time Series Methods for Ecological Distances

Try subset_samples(Lauren.scale, MonthSampleTaken=="January" | MonthSampleTaken= ="February") The | means "or" You could also do subset_samples(Lauren.scale, MonthSampleTaken %in% c("January", "February")) On Monday, June 8, 2015, locon833 wrote: > Hi All, >...

Temporal Autocorrelation, and other Time Series Methods for Ecological Distances

I am working with time series microbiome data right now and am hoping to contribute some methods to phyloseq in the future. For now, I will say that Cram et...

Temporal Autocorrelation, and other Time Series Methods for Ecological Distances

You need to explicitly call the distance function from the phyloseq package i.e. jacc Hi @CarlyRae https://github.com/CarlyRae > > I am attempting to calculate jaccard distance so that I can...

plot_ordination color and shape variables were not found

hmm this is strange. I don't think your error has to do with whether the type is "samples" or "taxa", but rather the variable you're passing to color and shape...

plot_ordination color and shape variables were not found

I would like to reopen this issue as it represents a true bug. plot_ordination fails to map variables from the sample_data when there is only one column. ## Example with...