Michal Grzadkowski

icon indicating an email [email protected]

icon company @PrincetonUniversity icon location New York icon location Senior Research Software Engineer working as a developer on the cryoDRGN package for 3D reconstruction of particles imaged using cryogenic electron microscopy

Results 5 issues of Michal Grzadkowski

NOAA Buoy Station 01503 - Saul - 4801503

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Version 3.3.0: direct traversal, TestPyPI

In this release we have added `cryodrgn direct_traversal`, a tool for interpolating a path in the latent conformation space connecting two points in a direct line. We have also updated...

write_star --datadir and RELION3.1 optics propagation

I am preemptively opening this pull request as adding this feature has been on my radar for a while so I am eager to get this into the codebase promptly!...

Slow dataset loading in filtering notebooks with --ind

1 comment

**Describe the bug** The filtering notebook `cryoDRGN_filtering` produced as part of `cryodrgn analyze` will hang for larger inputs when `--ind` was originally specified as part of training. This happens as...

Incompatibility with RELION 5 .star files

> Thanks. I reinstalled the v3.4.0 pre-release as you suggested, and it does parse the pose data from run_data.star without error. > > If I try to move to the...

bug