mhjonathan

Wonderful. What I hypothesised is that Species A produces some kinda metabolic product which could affect the growth of Species B. As the data is originated from human gut, I...

Thank you for sharing the predefined medium! That really helps :) If I want to use the predefined medium, should I gapfill again with the medium for downstream analysis/simulation? or...

I get your point, but what I also want to see is that whether their metabolism is changed under gut-like environment (non-optimal) cuz there are some species secreting toxins/different substrates...

> To your first question, I would not expect to see any toxin or stress effects with metabolic models because the modeling approach does not cover it. But I'm not...