HS2
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mhhennig
Software for high density electrophysiology
Hi guys, The cutout_length reported for the detection state is off by one: https://github.com/mhhennig/HS2/blob/9aa243fe72ca478065c161741ed0ddb891a9d24c/herdingspikes/detection_localisation/detect.pyx#L163 compare e.g. to https://github.com/mhhennig/HS2/blob/9aa243fe72ca478065c161741ed0ddb891a9d24c/herdingspikes/hs2.py#L92
The final hdf5 file should contain information about the version of HS2 that was used to generate the file. One option could be the git commit hash. Would this be...
To avoid confusion, the intermediate .bin files should store ALL relevant info, which includes the sampling rate.
Methods to filter out unwanted spikes or clusters, e.g. based on classifier.
In a similar way to what is done with sampling, the Probe object should tell us what the units of voltage are, so that we can plot in a meaningful...
When calling `SaveHDF5` on an instance of `HSClustering`, I get the following : ``` AttributeError: 'HSClustering' object has no attribute 'expinds' ``` It seems like the `__init__` of `HSClustering` used...
Hello, So I get the following error on trying to run the demo notebook. I thought it might be related to this: https://stackoverflow.com/questions/47022997/jupyter-the-kernel-appears-to-have-died-it-will-restart-automatically But it might be a win10 specific...
Due to the following error below, I am unable to install herdingspikes2. I have visual studio 2022 installed and I am on python 3.12, which version 0.4.0 supports. ``` error:...
Hello, I am wondering if you could clarify what the units are for the parameters: `threshold, min_avg_amp`, and `AHP_thr.` We are hoping to modify our parameters for our sorts as...
I noticed a few things while comparing the newer detection method with the older one : - Running both with the same parameters on the same data, pre-processed with SI...