mhaukness-ucsc

Hi @ATPs , I created a file with the predicted protein sequences here that you can use: http://courtyard.gi.ucsc.edu/~mhauknes/T2T/chm13.draft_v1.1.gene_annotation.protein.fasta

These incorrect open reading frames are to be expected from the GENCODE annotation (they aren't errors). For example, many of the transcripts in GENCODE have tags like `cds_end_NF` and `cds_start_NF`...

Hi @mpovidlov1, could you please provide some examples? I think this is likely a result of errors present in the original GENCODE annotations, but I'll look into it.