Michael Harms
Michael Harms
Presumably, this is related to the fact that MNINonLinear/brainmask.2.nii.gz has a 'LabelTable' associated with it, even though it doesn't contain any label information (e.g., all the values are either 0...
I'm not entirely clear on the purpose of `makeSubjectTaskSummary` yet, esp. in the context of subjects with multiple runs for a given task and thus a "Level2" analysis, but it...
For QC purposes, it would be helpful if `fMRIVolume` saved out a bias-field corrected, but non-masked version of the SBRef in MNI space.
FSL 6.0+ apparently expects that the `-r` (reference) volume will be a single 3D volume in any call to `applywarp` within FSL 6.0+. https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1811&L=FSL&D=0&P=74472 To me this change in behavior...
https://github.com/Washington-University/HCPpipelines/blob/1f89abcacbb97e6369f1aeb454cd411ebe8921a8/RestingStateStats/RestingStateStats.sh#L949 Is the "real_bias" file created by any of the script currently in the repo?
@glasserm @gcburgess What do you think about us adding 'zstat' explicitly as part of the summary (merged) file names that result from the task pipeline, so that we no longer...
Prior to running the Pipelines in the HCP-D/A data, it would be good if we could do an "audit" of the full set of pipeline outputs, with a goal of...
@glasserm What's your thinking for how best to apply RestingStateStats in the context of multi-run-fix? If we run RSS on individual runs, that won't really reflect the manner in which...
It would be helpful to users if we included a general orientation to the purpose of *all* the different 'sub'-pipelines (i.e., sub-directories in Pipelines directory), either as part of the...
The following is based on my experience with running T2w anatomical scans through version `22.0.6`, but looking through the current code in the `master` branch, I don't see any reason...