Justin Choi

Got the right genome.fa from 2.1.2-tag1.

@tomasbruna I tried to download it, but failed. wget http://topaz.gatech.edu/GeneMark/Braker/RNAseq.bam --2022-09-06 16:32:00-- http://topaz.gatech.edu/GeneMark/Braker/RNAseq.bam Length: 171459517 (164M) [application/octet-stream] Saving to: “RNAseq.bam” 45% [=======================================> ] 77,256,264 --.-K/s eta 42s

I've tried several times, but it didn't work.

I got it. Thanks a lot.

@KatharinaHoff I used braker 2.1.6 and augustus 3.4.0.

I used git clone for braker and augustus, but still got the error. ``` > cat test1.log Wed Aug 10 14:50:38 2022: Log information is stored in file /ddn/work/cjh/test/braker-20220128/tests/test1/braker.log sh:...

@KatharinaHoff Could you have time to guide me how to resolve this issue?

[train.f.gb.gz](https://github.com/Gaius-Augustus/BRAKER/files/9401130/train.f.gb.gz) @MarioStanke Thanks a lot for your reply. While preparing a file, there is no Sp_1 in /app/redhat6/augustus/augustus-20220316/config/species/. Is that the problem?

As shown in braker.log, Sp_1 was created using new_species.pl, but removed somehow before running etraining. So I ran etraining after running new_species.pl, but etraing was failed again.

No. The directory was created.