Matt Thornton

Hello! Could you post a quick tutorial on how to format a linseed object?

2

Hello! I am working through the tutorial and I have my own RNA-seq data that I would like to process with linseed. Does the LinseedObject function require data be formatted...

10X multiome subsetting cancer cell line with blacklist_ratio ~ 1 for both hg38_blacklist and hg38_blacklist_unified

4

### Discussed in https://github.com/stuart-lab/signac/discussions/1740 Originally posted by **methornton** July 9, 2024 Hello! I am processing some cancer cell line 10X plus Mulitome data and I have kind of an outlier...

Hello! I am trying to learn how to use LOLA to find transcription factor binding sites for sets of differentially expressed genes. I am using the human gencode annotation and...