Merel Kuijs

icon company Helmholtz Munich icon location Zurich icon location PhD Intern @ Genentech; PhD Candidate @ Helmholtz Munich; MSc Computational Biology and Bioinformatics @ ETH Zurich

Results 2 issues of Merel Kuijs

Update required: extend_formula_ncem

Hi Anna, Currently, the `extend_formula_ncem` function (referenced below) computes a list of coef_couplings: ``` coef_couplings = [f"{PREFIX_INDEX}{x}:{PREFIX_NEIGHBOR}{y}" for y in cell_types for x in cell_types] ``` For my cell types,...

Resolves deprecation error

**PR Checklist** - [x] This comment contains a description of changes (with reason) **Description of changes** I ran into deprecation erros trying to run NCEM on deconvoluted Visium data. `np.int`...