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                                            menglab

Allow any nucleotide to map to a specific location

Thanks a lot for your timely response. The reference sequence is an IVT transcript of 1k long. Not very long, but probably long enough to make things complicated.

Allow any nucleotide to map to a specific location

The mutations are random, for example, ATGT can be mutated to AAGC (first T mutated to A, second T mutated to C) The mutation should depend on the local sequence...

Allow any nucleotide to map to a specific location

> > It seems like you would just want to change all the T's to N's in your reference, and then map against that... > > But there must be...

Allow any nucleotide to map to a specific location

We couldn’t find a solution so far. Sorry for that. From: kir1to455 ***@***.***> Sent: 2024年5月24日 11:41 To: lh3/minimap2 ***@***.***> Cc: Jia Meng ***@***.***>; Mention ***@***.***> Subject: Re: [lh3/minimap2] Allow any...