Maryann E. Martone

Where are all the cerebellar cortex neurons in the CUTs

4

I only see two. Purkinje cell is missing and all the other well known cell types.

Why are there two Pvalb?

1

Both seem to be used but I think only one should be. One comes from NCBI gene.

Sequence feature vs gene

1

I know we discussed this, but it seems that the molecules are split between these two classes. If they are redundant, then we should only have one.

CRITICAL: Why are parvalbumin neurons coming up spiny?

1

When I search the Allen Data Base for Htr3a-Cre_NO152|Pvalb-T2A-Dre, all I get are aspiny neurons (as I would expect), but in the NPO, I get these: 'Mus musculus female right...

Where are the definitions for abbreviations

1

'Mus musculus neocortex Basket +Cav2_1_P_Q +GluA1 +GluA4 +Kv3 +Nav1_1 +Nav1_6 +:Nav1_7 +PGC1α +RGS4 +Ras111b +Rspn +α1GABAaR +α4GABAaR +δGABAaR +Adcy8 +AM +Cckbr +Cox6c +Cplx1 +Mef2c +Pparg +PV +Slit2 +Slit3 +Syt2 +SP...

Mus musculus neocortex +ilxtr:RGS6 +ilxtr:RGS7 +ilxtr:Zip1 +ilxtr:Znt3 +CR +Inhbb +CNP +SS +Pde2a +Adcy2 +Grin3a (intersectionOf GABAR ilxtr:LowerExpression) (intersectionOf GluR

Markram still not showing up under somatostatin neuron

3

Please fix before you go away.

Read fail when trying to open the development version

1

ull Stack Trace ----------------------------------------------------------------------------------------- org.semanticweb.owlapi.io.OWLOntologyCreationIOException: Operation timed out (Read failed) at uk.ac.manchester.cs.owl.owlapi.OWLOntologyFactoryImpl.loadOWLOntology(OWLOntologyFactoryImpl.java:231) at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.actualParse(OWLOntologyManagerImpl.java:1262) at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:1215) at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntologyFromOntologyDocument(OWLOntologyManagerImpl.java:1172) at org.protege.editor.owl.model.io.OntologyLoader.loadOntologyInternal(OntologyLoader.java:104) at org.protege.editor.owl.model.io.OntologyLoader.lambda$loadOntologyInOtherThread$0(OntologyLoader.java:62) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745)...

Should be GABA receptor not GABA receptor role rdfs:label "Mammalia neocortex EGL (with-axon-in cortical layer I) Martinotti +GABA receptor role +Glutamate Receptor +SS +GABA interneuron" NeuronCUT and ((hasLayerLocationPhenotype some 'cortical...

Or whatever you want to call it and classify ACT neurons under that type