Tanmay Nath

icon indicating a website link https://www.jhsph.edu/departments/biostatistics/directory/postdoctoral-fellows/ icon indicating an email [email protected]

icon company Johns Hopkins University icon location Baltimore

Results 5 comments of Tanmay Nath

processed image is neither in T1 nor in MNI space

Yes, I am using the original T1 image mainly because the T1 reference aligned to ACPC is not present if I use the `--dwi-only` option. Also, can you please also...

processed image is neither in T1 nor in MNI space

Thanks, good to know that the `output-space` is deprecated. Also, is that the reason that the orientation of all the pre-processed DWI images is flipped to LPS?

processed image is neither in T1 nor in MNI space

Thanks for your help/suggestions :)

processed image is neither in T1 nor in MNI space

@bwinsto2 Sure, that would be helpful. Thanks :)

iteration: 60000 loss: 0.0414 lr: 0.02 2018-04-08 21:22:32.268116: W tensorflow/core/framework/op_kernel.cc:1192] Not found: ; No such file or directory

Replace the line 132 in train.py : `saver.save(sess, model_name, global_step=it) `to `saver.save(sess, str('./'+model_name), global_step=it)` and it should work