María de Toro

thank you for your comments, today, after reinstalling all the packages I have found a new error, it seems to be Kegg database kk_up = enrichKEGG(gene = gene_up, organism =...

Hi! I was trying FastP with smallRNA data and efectively, FastP does not detect these adapters.

Indeed, I'm trying to include a fasta file with the adapters to check... and I obtain this error: ERROR: the adapter can only have bases in {A, T, C, G},...

Hi! It's me again! I solved the problem importing files in other form (different than explained in the tutorial vignette). I leave here my solution, just in case somebody need....

For me, it works with Kraken2 output, but I cannot retrieve taxonomic information (only TaxID). Does somebody know how to solve it?

I mean I obtain the biom file ( I convert to csv to visualize) and I only observe the TaxID column and each sample column, but no more.

Thank you!! I completely forgot the --header-key option! Thanks!