Matt Shirley

Just an update: Once I started looking into process safety vs thread safety in python I remembered that I have addressed this in a previous issue: > @Maarten-vd-Sande Looking more...

Yes, maybe this can be resubmitted under a new name? It's kind of silly that the PyPI version is so far behind the current master...

I'd be really glad to have a clean `gffutils` based solution for this as well! A while back I tried to put together a utility to convert transcript coordinate SAM...

Looking at your code you should be able to use some `from six.moves import ...` strategically after your 2to3 conversion to provide back-compatibility for py2.6 and 2.7.

Yes, that's the idea. It's good to have some unit tests that you can run and then use something like [tox](http://tox.readthedocs.org/en/latest/) to run your tests under versions of py2 and...

As this issue is tagged with `OS: macOS`, but macOS runner images were not specified in the description, will python 3.11.0 macOS builds be produced? I'm testing against 3.11.0 using...

It looks like this project is really geared to the specific reference assemblies 23andMe uses. I was just taking a look at seqseek to see how similar it is to...

@meichthys I could kiss you right now! This solved my problem after a failed hassova update!

Hey @anderdnavarro. Yes, my initial reason for excluding insertions and deletions is that these would invalidate the sequence index as well as the line lengths if the sequences are line...

@maplecai I don't believe this process safe method will ever be fast due to the shared lock. You'll always have some processes waiting their turn. There might be two alternatives...