Disha Tandon

Hi, I am using anvio-7.1. I have 20 different samples from 3 groups mapped to the same contigs database. I obtain mostly same number of bins in each sample (because...

Include interaction data related to push-pull mechanism

18

Hi @jhpoelen , I am working on connecting data from globi with metabolite data from lotus & enpkg. I am using the 'interactions.tsv.gz' file from the globi website (https://www.globalbioticinteractions.org/data). I...

Regarding countries for locality names

3

Hi @jhpoelen, I am trying map locality ids/names of some observations on a world map. For many observations, the locality Ids are not available, where I try to use locality...

[As](url) mentioned in one of the comments of #993, I found that the habitat information (habitatName and habitatId) although present in the initial template interactions.tsv (https://github.com/globalbioticinteractions/template-dataset/blob/main/interactions.tsv), does not show-up in...

Ntr allelopath issue809

1

Added ID ranges for mdrishti and inverse term 'has alleopath' for 'alleopath of'

NTR: has allelopath

8

The following term request is for the inverse interaction of 'allelopath of' http://purl.obolibrary.org/obo/RO_0002555. Linked to https://github.com/globalbioticinteractions/globalbioticinteractions/issues/993#issuecomment-2291292052 ## Preferred term label has allelopath ## Synonyms none ## Textual definition A relationship...

linked data navigation

1

Hi, I want to implement a functionality for navigating linked data within a KG through a qlever instance. **Problem** Certain nodes have an external URI (e.g. : wikidata links) and...

Logic for memory allocation

2

Hi, I have made a local qlever sparql endpoint for my data, which combines two knowledge graphs (~23 GB of uncompressed ttl files; ~250,000,000 triples). Couple of simple join queries...

`list index out of range`

1

Hi, I am trying to run auto-corpus on some html files downloaded from PMC (e.g.: PMC1201259). I get the `failed due to list index out of range`. Not sure what...

Hi, I am working on a schema for presenting bacterial mutation information using biolink-model. For association of a bacteria to its habitat, I cam across the `Association` - `OrganismTaxonToEnvironmentAssocitation` (https://biolink.github.io/biolink-model/OrganismTaxonToEnvironmentAssociation/)....