BoneJ
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mdoube
A collection of plugins for bone image analysis in ImageJ
in Slice Geometry, Bonej takes values from (0,65536) "unsigned integer" for calculating density instead of signed integer (-32768;32768) that are shown in imagej panel. This is confusing. An option box...
Interesting technique to create a shape- and topology-preserving skeleton then classifying and dilating it to segment individual trabeculae. Liu X, Sajda P, Saha P, Wehrli F, Bevill G, Keaveny T,...
More rod and plate classification, following on from the shape-preserving thinning approach DTA. Saha P, Yan Xu, Hong Duan, Heiner A, Guoyuan Liang. Volumetric Topological Analysis: A Novel Approach for...
Another octant-scanning method that may outperform surface mesh creation Ohser J, Nagel W, Schladitz K (2009) Miles Formulae for Boolean Models Observed on Lattices. Image Anal Stereol 28: 77-92. http://www.wise-t.com/ias/article.php?id=242&year=2009&issue=6
Implementation of mesh-free estimation of SMI uses octant neighbourhood scanning, so could create an OctantScanner class that takes a LUT as input and returns a summary. Ohser, J., Redenbach &...