Mike Keehan

Aligning contigs from deNovo Assembly with ngm-lr

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Hi, I have recently tried using ngmlr to align contigs against a reference. The contigs come from 10x Chromium Supernova deNovo assemblies. I get the following warnings in my output...

Differences in R2 and tss compared to GLM

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Hello, Thank you for writing this package I wanted to use it as a go faster drop in replacement for the GLM.jl package. As a test I tried fitting the...

a small test

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Here is a small testsuite for R^2. An error (compared to GLM) occurs when no grand mean is fitted and no fixedffect is used in the model. Otherwise they pass!

Please enhance documentation on the recommended use of the BWA MEM -M and -Y option

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I am planning a large alignment run on a non human species using a non alt aware reference. I would like to determine which combination of BWA MEM "-M" and...

Hi all, I have been having a lot of fun with Julia drawing heatmaps using the StatsBase histogram package. I have only just realised that ```push!``` silently fails when given...

Suggestions

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I tried to track down why the Unit Tests for XSim were failing and ended up looking quite closely at some parts of JWAS on the way. I have made...