mcroxen

@rneher we have our own in-house oligos that we like to keep an eye on, and thought it would be handy to be able to capture both substitutions and indels...

Agree this would be great. Also swineH1, H7 and H9 schemes if there are acceptable ones would be fantastic.

Perhaps relevant, good starting point swine H1 https://pubmed.ncbi.nlm.nih.gov/27981236/ H5 https://onlinelibrary.wiley.com/doi/10.1111/irv.12230 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4548997/ https://www.who.int/publications/m/item/evolution-of-the-influenza-a(h5)-haemagglutinin-who-oie-fao-h5-working-group-reports-a-new-clade-designated-2.3.4.4 https://cdn.who.int/media/docs/default-source/influenza/who-influenza-recommendations/vcm-northern-hemisphere-recommendation-2022-2023/202203_zoonotic_vaccinevirusupdate.pdf H7 https://pubmed.ncbi.nlm.nih.gov/30226157/ H9 https://pubmed.ncbi.nlm.nih.gov/31871234/