mchowdh200

Hi can you provide an example vcf for me to test with? I'll try to see what I can do.

Hi Michel! The samplot visualizations for paired end sequencing and long reads is a bit different. Things like depth of coverage will look the same, but long read visualizations lack...

Hi Can, Sorry for the long delay in response. During the development of Samplot-ML, we trained a long-read model, but had very limited training data so performance was still poor...

Hi pbilling! Out of the box it does not, but it would not be to difficult to implement. - In `samplot-ml/workflows/config_utils.py`, I have a abstract class `Data` from which I...

There seems to be a problem with samplot itself when it is called with these regions. I think I'll have to do some debugging on the samplot side of things....

To reproduce, I'd like the BAM (ie the sequence alignments), reference genome (and index) and the vcf along with your configuration file. Email me at [email protected] There's also a chance...

Also could you post the lengths of the chromosomes for each of these failed cases? My suspicion is that the failed regions are occurring close to the boundaries of the...

Thanks, I got the email. I'll try to get to the bottom of this issue within a week. I'll let you know if figure something out.

Hi Min, are you installing into a fresh conda environment? Also can you provide the text output to `conda list`?