mcbrider5002

Previously, some of the ViMMS internals were moved to [mass-spec-utils](https://github.com/sdrogers/mass-spec-utils/tree/master) so they could be used as a separate, lighter-weight library. Unfortunately, that repository is no longer maintained. Additionally, there is...

Currently `IndependentMassSpectrometer` supports two kinds of arguments to generate scan times. [(Example.)](https://github.com/glasgowcompbio/vimms/blob/dc6df673f6112132e72bf0cecf93f8c74901485a/vimms/MassSpec.py#L555) The first is a dictionary mapping MS-levels (int) to either static values or a callable (of no arguments)....

No Targeting Below 80 m/z

2

ViMMS seems to have problems when scheduling fragmentation events below 80 m/z, even though defined constants would indicate the minimum should be 70 m/z. Fragmentation events between 70 and 80...

Breaking Overlap Controllers with RT Drift, then Correcting

6

Currently we have multiple controllers that treat RoIs as boxes and use properties of overlap between these boxes for prioritisation. (e.g. Non-overlap controller uses the unique area of a box.)...