Michael D Caponegro

Results 5 comments of Michael D Caponegro

Question about Reproducing a Plot in the Paper Introducing the SCTransform (Hafemeister, C., & Satija, R. #1999)

Thank you On Wed, Apr 27, 2022 at 12:35 AM Christoph Hafemeister < ***@***.***> wrote: > Hi Michael, > > Re: Fig1, please have a look at my comment at...

Conversion of h5Seurat object to h5ad not capturing RNA assay after integration

Any info on this? I have the same issue but it is doing it with the original RNA assay (not using an integrated assay). The Seuratdisk pipeline only transfers the...

error during installation: cffi.CDefError: cannot parse "blah1 ReadConsole

same problem trying to install on local Windows 10 PC using python 3.7. Any updates?

Warning message for Quick-TRANSfer

I just did some troubleshooting following all of these posts and it turns out my error was coming from samples with `Idents() `set to `NA`. I was using this NA...

rawParse Error: Error in `colnames<-`(`*tmp*`, value = c("gene", "exprs", "cell_type")) : attempt to set 'colnames' on an object with less than two dimensions

there needs to be a column named "cell_type" in your sseq.data dataframe with the cell type info