Michael Hall

closing in favour of #104

I wonder if anyone would like to test out #164 as that fixes the two examples in this issue?

I appreciate changing the filenames is the easier option, but is quoting the file paths also not an easy fix in Perl? (I don't know anything about Perl so feel...

Yes, this is likely a memory problem. I have had lots of problems with porechop's memory usage. By default it actually tries to get all the threads available, and the...

The nanopore runtime and memory usage of drprg with the previous version of de novo discovery https://github.com/mbhall88/drprg/issues/15#issuecomment-1275609531 and the Illumina https://github.com/mbhall88/drprg/issues/15#issuecomment-1276908991 Pandora is the vast majority of runtime and memory...

Okay, so here are the updated benchmark figures ## Runtime ### Illumina  Median is 91s, down from 98s. So it is faster now on Illumina! ### Nanopore  Median...

Nice work as always @leoisl. FYI, I have moved that directory to `/hps/nobackup/iqbal/mbhall/pandora_issue316/predict_without_debug` as it will get overwritten next time I run drprg. I have also copied the current drprg...

Oh my bad, I'll add the debug stuff to map as well for future. No rush, as you say, it's holiday season

Hmmm, just came across this again. I'm assuming this fix isn't present on `dev` branch? I'm wondering if this is having an impact on our `compare` results for the head...

Exactly...