Michael Hall

This will be fixed in the next release

@jsgounot did you get the same read name multiple times? If so, you should buy a lottery ticket as the read names are generated with [`uuid`](https://docs.python.org/3.6/library/uuid.html) https://github.com/rrwick/Badread/blob/09fb3082e5b2530c4e17e20e262ff227eb28ff13/badread/simulate.py#L77

This has been resolved now (https://github.com/bioconda/bioconda-recipes/pull/41633). The latest build version (0.4.0) on bioconda fixes this

I can't speak for whether they are current, but regardless todos should be in issues, not code comments.

I've also notice you don't accept [duplications](http://varnomen.hgvs.org/recommendations/DNA/variant/duplication/) in the recommended format? i.e. `c.643dup` must specify the duplicated base at the end e.g., `c.643dupC`

Thanks for the clarification. Trying to support all of HGVS would likely be difficult, and would likely require developing a library. I just noticed https://github.com/biocommons/hgvs though! I haven't used it...

I'm struggling to maintain this repo let alone create a new one 😭

I'm a little confused here ```python def f(x, y=): pass ``` is not valid python. And this is essentially the crux of the issue I think. ``` rule a: input:...

So I guess the question here is if snakefmt should raise an error (as we do in this issue) in the case of rule c's input in your example @johanneskoester?...

Closing this as raising an error seems to be the correct behaviour.