mawa86

plot_ef_bar() left and right sided bars

1

Hi Sorry for the very basic question, but I cannot seem to figure this out. After performing LEfSe, I'm trying to plot the ef_bar plot. I'd like the plot to...

Hi Is there a way to make run_lefse function handle NAs in group variable? I have one sample for which the grouping variable isn't present, and running lefse returns a:...

problems installing via conda/mamba

1

Relatively new to everything that isn't Windows I'm afraid.. can anyone help me out here? ``` (kraken2) martin@martin-VirtualBox:~$ mamba install -c bioconda trim-galore Looking for: ['trim-galore'] bioconda/linux-64 Using cache bioconda/noarch...

Database library does not exist

1

Hi Just as issues #85 and #164, I'm trying to run bracken but can't get past the database building. I've previously downloaded and built the 16S_SILVA138_k2db database and using it...

empty .biom files from normal-looking bracken reports?

4

hi Im trying to make .biom files from three sets of reports, 1 from kraken2 and 2 from bracken. The kraken2 and first bracken work fine (theyre both down to...