Marc Attiyeh issues

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                                            Marc Attiyeh

Bug when processing indels

https://github.com/AlexandrovLab/SigProfilerMatrixGenerator/blob/8360cbe3c0e3e0392a9addba9639ceb18a2dd7f6/SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py#L1306 this line should be `start = str(int(start) - 1)` without the `-=`

mysterious hyphens when processing INDELs from ICGC data

https://github.com/AlexandrovLab/SigProfilerMatrixGenerator/blob/f945199230a4fc0671d90a7873b079930a84d227/SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py#L332C10-L332C10 Hello, why are the hyphens added to `ref` and `mut` when the other functions don't do similar actions? This breaks downstream because they are added again in MutationMatrixGenerator.py (lines...