neuronvisio
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mattions
A Graphical User Interface with 3D Visualization features for NEURON simulation enviroment
Bumps [babel](https://github.com/python-babel/babel) from 2.0 to 2.9.1. Release notes Sourced from babel's releases. Version 2.9.1 Bugfixes The internal locale-data loading functions now validate the name of the locale file to be...
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Bumps [pygments](https://github.com/pygments/pygments) from 2.0.2 to 2.7.4. Release notes Sourced from pygments's releases. 2.7.4 Updated lexers: Apache configurations: Improve handling of malformed tags (#1656) CSS: Add support for variables (#1633, #1666)...
Bumps [jinja2](https://github.com/pallets/jinja) from 2.8 to 2.11.3. Release notes Sourced from jinja2's releases. 2.11.3 This contains a fix for a speed issue with the urlize filter. urlize is likely to be...
This is what I get, and I can not see anything in Mayavi ``` @bream ~/Lab/GJ_Net_Model/Spikelets_reconstruct_network $ python Python 2.7.12 |Anaconda custom (64-bit)| (default, Jul 2 2016, 17:42:40) [GCC 4.4.7...
Hello, I have tried to get neuronvisio working. I tried to use the conda method, ```conda create -n neuronvisio_env neuronvisio -c mattions``` but this is what I get: ``` (neuronvisio_env)...
Neuronvisio uses the NEURON readxml parser to load NeuroML file and does not deal with it directly. Single Cell works ok, however Network doesn't. Check the example @ https://github.com/mattions/neuronvisio/blob/master/examples/cerebellum_network/NeuroML/Ex6_Cerebellum_networks.xml where...
It would be great to have an automatic test that checks if we can run the models in ModelDB that are listed already in the xml. We can do this...
``` In [2]: NEURON: lambda_f error: 0 diameter for 3d point 0 of soma. near line 0 {forall SectionList[9].append()} ^ execerror("lambda_f error:", "0 diameter for 3d point 0 of soma.")...
We now use BeautifulSoup3.2, bundled with Neuronvisio source code. Given the fact it's on pipy http://pypi.python.org/pypi/BeautifulSoup/3.2.1, I was thinking that we may can extract it from the source code and...
If ModelDB.xml is updated by different people (using bin/neuronvisio-modeldb-updater) the result may differ. This is due to non-deterministic of the ordering of Python's dictionary.keys() used to insert new items, as...
