Matthias Samwald
Matthias Samwald
Having installed WebProtege 4.0 via Docker, there seem to be no webprotege.properties and mail.properties files anywhere in the image file directory (not even in WEB-INF). How can those settings be...
The ontology contains properties with rdfs:labels such as "hits@10" (without a datatype). When uploading the ontology to WebProtege, the rdfs:label becomes "hits", the '@' sign disappears and the '10' becomes...
Looking at the currently used identifiers, it seems to be a mixture of OBO PURLs and ad-hoc solutions for some of the molecular entities. identifiers.org identifiers should make it possible...
N-gram embeddings (e.g., bigrams) seem to improve performance on many tasks compared to simple word embeddings. Again, fastText could be a role model?
The embeddings put "mammal" on the rim of the disk, while all other entities are amassed in the middle. Actually, the inverse should be desired, no? Maybe something is flipped...
We might tap into experience of the BigBIO group for this process.
These processes are now still sorted under 'Meta: AI process without benchmark data'. A cleanup kit should delete these classes so they can be sorted under other branches in the...
We disagree with some of the class structure of EDAM and are changing it. To honor EDAM policy, we need to change the URIs to our own namespace, and retain...
We need to change ontology so that mere synonyms are listed not as separated properties, but as (I would suggest) obo:hasExactSynonym annotations of canonical relations. The obo synonym annotation properties...
some of them might be counting millions (e.g. "Parameters (M)"). Normalize to absolute integer values