matthewgaskinsukhsa

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Cortex calling regions with no reads as indels

Hi Zam, Thank you for your prompt response. Yes, in those two examples, cortex calls an indel instead of a deletion as you would predict. I’ve added the cortex call...

Cortex calling regions with no reads as indels

Hi Zam, Just following up on my previous question to see if you have any additional comments or thoughts about this issue. Thank you again for your support with this....

Cortex calling regions with no reads as indels

Hi both, thank you for your suggestion. I've replaced the original sequence with the long alternate allele called by cortex, and we now see reads spanning this position in the...