Matthias De Smet

ughh.... I already fixed that checksum a couple of times 😞 Seems to be different each time it goes through the CI. Singularity and conda pass...

Yep, wanted only to remove the checksum. My regex was ... not so good.

Tests pass where they need to, checksums seem to be ok this time around. versions.yml were re-added. Good to merge? (Please say yes)

> @matthdsm Can you list the failed subworkflows in an issue, so we know which one we need to update? Done!

Off-topic: familiar with https://github.com/brentp/jigv? It's a similar package, but with some extras

I found @brentp to be a treasure trove of handy tools for every occasion!

Somewhat more simple diagram ```mermaid flowchart TD ch_reads & ch_aligner_index & aligner --> alignerbowtie2{aligner == bowtie2}--> BOWTIE2_ALIGN ch_reads & ch_aligner_index & aligner--> alignerbwamem{aligner == bwamem} --> BWAMEM_MEM ch_reads & ch_aligner_index...

That's a toughy since it's both samtools...

I'd even consider dropping `stats` from all the various workflows. I don't see much value in running it a million times when using subworkflows. I would much rather have 1...

⏫ at some point we're just duplicating code IMO