Matthias De Smet

https://quay.io/repository/biocontainers/snap-aligner

Great! Thanks for the quick reply! Cheers M

Talk about "over the air" updates 😉

Unrelated question: say I have an array of `FastqGz` from and I need to create a sample map thats consumable as a list of files (`fofn` in gatk terms) Practically,...

Great, thanks! So I suppose something like this should work? ``` class GenerateSampleMap(janis.PythonTool): def id(self): return "GenerateSampleMap" def version(self): return "v0.0.1" @staticmethod def code_block(files_list: List[str]): samplemap = {} for filename...

Awesome, thanks for the help Code is now ``` class GenerateSampleMap(janis.PythonTool): def id(self): return "GenerateSampleMap" def version(self): return "v0.0.1" @staticmethod def code_block(files_list: List[str]): samplemap = {} for filename in files_list:...

Great to hear! I'll be monitoring the repo for changes I can test. Thanks again for this amazing initiative M

Awesome! Looking good! As it stands now, we're converging on CWL for our workflows, so I you don't mind, I'll hold out on testing until that part's finished too. Thanks...

Thanks! I'll be sure to give it a go ASAP! Cheers M

Looks great, I'll be sure to check it out!