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                                            Matteo Pilz

Add conversion for MSSpectrum & PeptideHit to spectrum_utils MsmsSpectrum

## Description Converting from MSSpectrum to MsmsSpectrum works with tested spectrum. PeptideHit is currently missing and interactive plotting needs to be tested as well. ![image](https://github.com/OpenMS/OpenMS/assets/87119228/210ff530-037f-4709-bdfc-9ac5da5658bc) ![image](https://github.com/OpenMS/OpenMS/assets/87119228/b3d9ba3f-f862-4758-8777-9ac55c3fb117) ## Checklist - [...

Updated Docs to use PeptideIdentificationList

## Summary by CodeRabbit - New Features - Introduced a dedicated PeptideIdentificationList container in the Python API for handling peptide identifications. - Enhanced 2D peak data retrieval to accept an...