Matteo Ferla

Results 14 comments of Matteo Ferla

Possibly related, I had a slightly different error due to multimer and "features". Namely, in my hacky setup I run the `colabfold.batch.run` command in a location with internet asking for...

I for one have some repos that aren't full fledged projects, just snippets. Recently, I made a [repo w/ Python snippet](https://github.com/matteoferla/Snippets-for-ColabFold) for things like inspecting the protein name / species...

I might be wrong, but the setup.py is rather curiously written, I don't know your guys setup and I have not looked at the history, but it very much looks...

Thanks! About PyRosetta, for ReadTheDocs in a different project of mine, Fragmenstein, I made a mock of PyRosetta, which allows the typehints to crash on import. https://github.com/matteoferla/Fragmenstein/blob/master/fragmenstein/igor/pyrosetta_import.py This feature/hack was...

I have not actually tested a from scratch installation in a long while... and there's a bug the `requirements.txt` in the main app has `pycrypto` package, which is incorrect โ€”this...

Great. I should have specified that yesterday was a holiday here for May day (workers' day, Saint Walpurgis, Calan Mai or Floralia etc etc, but basically a holiday where Morris...

That is very much a standard Rosetta thing. It can be controlled `pose.dump_pdb('๐Ÿ‘พ๐Ÿ‘พ๐Ÿ‘พ.pdb')` as opposed to `pose.dump_scored_pdb('๐Ÿ‘พ๐Ÿ‘พ๐Ÿ‘พ.pdb')`. When I deal with #29, I will add the option for the latter...

The reason is that the 'armory' was temporarily removed in the dev branch as I am hoping to have it as a json with more details โ€”e.g. finesse. For now...

Thanks (and fixed)! To be honest I have not tested the alternative NGL viewport name option since early development, so there may be other oddities. One I can see is...

Okay. I have just done some major code tweaks as I needed to implement multicolored residue selections. I changed `myData` to be more flexible with multiviewport situations and there is...