Matt Douglas

abyss-overlap "Assertion `tend <= tseq.size' failed"

7

Hi, I'm running an analysis that repeatedly fails at the abyss-overlap step and it seems to be tied to the size of the input. I'm running `ABySS version 1.9.0` on...

snakemake.exceptions.WorkflowError: Config file is not valid JSON or YAML

12

> Hello, I am trying to run MAVIS and I am getting error. -bash-4.2$ snakemake -j 1 --configfile mavis.cfg -s Snakefile Traceback (most recent call last): File "/u/home/m/mdistler/project-jflint/anaconda3/lib/python3.8/site-packages/snakemake/io.py", line 1604,...

Fixes: `ValueError` raised when trying to load a pipeline config that does not have 'manifest.name' defined. ## PR checklist - [x] This comment contains a description of changes (with reason)...