Matt Cieslak
Matt Cieslak
Here is a link to better candidate data for testing: https://upenn.box.com/s/qz1ak694udeete9sfzez2hxvvf77a97x It is from HBN-POD2 which has a CC 4.0 BY license based on this [info](http://fcon_1000.projects.nitrc.org/indi/cmi_healthy_brain_network/sharing_neuro.html)
Would you consider adding a file dependency? There is a second cnf that works for volumes with odd numbers of slices. here's `b02b0_1.cnf` from the fsl mailing list ``` #...
Is there any interest in adding neighboring dwi correlation or fiber coherence from dsi studio?
I think the raw_neighbor_corr was one of the best scoring features in hbn-pod2. It's calculated on the unprocessed data. Also, I think the computation is simple enough that we could...
@oesteban great point. The neighbor correlation method doesn't have a patent but might still have a non-commercial restriction on the use of the dsi studio implementation. I could implement the...
[Most recent encounter with this issue](https://neurostars.org/t/qsiprep-is-it-possible-to-manually-specify-topup-images/28823). If I open a PR for this do you think it would get approved?
I voted for new suffixes, but I also think BEP016 is relevant and would be happy with mdp and dwimap here
I added a table describing BigDelta and SmallDelta. These address @arokem's suggestion https://github.com/bids-standard/bids-specification/issues/349#issuecomment-544201991. Although I'm not sure if the thread is suggesting a json sidecar for the gradient tsv or...
Since the discussion has moved here, I asked friends who are using gradient tensor imaging how they store b-tensors and they pointed me to this repository: https://github.com/markus-nilsson/fwf_header_tools. I haven't gone...
The preprint looks very ambitious and covers diffusion encoding schemes that are still new and fairly rare. The main goal of this PR is to have a definite mapping between...