mattbcvs

I'm also curious on whether/how we obtain an ambient RNA-corrected output Thanks for the resource!

Thanks, a few replies: 1 I will use a common variants file from here (https://www.mousegenomes.org/). As a plan B I'll probably try doubling min_alt 2 Great! 3 Also great! 4...

Thanks, managed to get a PCA running and it's clear it needs better separation - using a set of common variants from the mouse genome project for the C57BL6NJ strain...

Small update on this, managed to identify the variants used for the clustering, these have much lower depth (DP) and quality (QUAL) than the demuxlet test dataset variants. I get...