Matin Nuhamunada

> While running the bgcflow with an example dataset, it takes an extra long time for creating conda environments. The following errors were found after the execution of the run.....

> I am using VM with 2 CPUs and 8GB memory. > You might need to increase the memory as some of the tools are demanding. Also, limit the cpu...

> I used a system with 8 CPUs and 64GB memory. Still, the problem persists. I am attaching the log file here. [log_file.log](https://github.com/NBChub/bgcflow/files/12879108/log_file.log) Can you attach this log file? `logs/prokka/prokka/prokka-GCA_000056065.1.log`

> > > I used a system with 8 CPUs and 64GB memory. Still, the problem persists. I am attaching the log file here. [log_file.log](https://github.com/NBChub/bgcflow/files/12879108/log_file.log) > > > > >...

> > > > > > I used a system with 8 CPUs and 64GB memory. Still, the problem persists. I am attaching the log file here. [log_file.log](https://github.com/NBChub/bgcflow/files/12879108/log_file.log) > >...

Hi, thanks for reaching out and using BGCFlow :) ### _I just wish to know how to use Custom input directory_ To use custom input directory, you will need to...

Hi WJ, Glad to hear it works :) The CLI for `bgcflow run` is just a simple wrapper of the `snakemake` CLI. So you can always directly use `snakemake` and...

Hi Jay, Unfortunately I cannot reproduce the error for creating the roary environment and the [test seems to work fine](https://github.com/NBChub/bgcflow/actions/runs/9602948190/job/26484990840). From the message: `package r-ggplot2-3.3.6-r42h6115d3f_0 is excluded by strict repo...

Hi Jay, I'm currently on summer vacation, so forgive me in advance if I can't reply to your issues swiftly. We do encounter some issues with Roary, and there are...

Hi @SPBorkar04, thank you for the suggestion. I guess we can build a randomize search for unused port. I will add this to the feature request.