Matin Nuhamunada
Matin Nuhamunada
Experimental feature are now available in: https://github.com/NBChub/bgcflow/tree/ppanggolin3 Usage: - checkout to the experimental branch: ```bash git checkout ppanggolin3 ``` - add `ppanggolin` to `TRUE` in the project config file -...
Hi Frida, thanks for the inquiries :) I think this request is too specific to be incorporated in the current workflow. For now, I would go with your second suggestion,...
This looks perfect! Some of the data on this table can answer questions that @EVBAST and @tilmweber discussed this morning. Adding URLs to the MIBIG hits proven to be useful...
Hi, this issue will be adressed in the 0.6.1 release. As the table is huge, it will be stored in .parquet format and will be loaded to duckdb (instead of...
This is now implemented in [the PR for v0.7.9](https://github.com/NBChub/bgcflow/pull/300) as a BGC subworkflow
Does this work on the smaller dataset?
We also need to check for the license of tools to be added and make sure they are open source. I cannot find the license for BAGEL4 https://github.com/annejong/BAGEL4 https://academic.oup.com/nar/article/46/W1/W278/5000017?login=false.
Thanks @ljdnielsen for pointing it out :)
> Following the quick and easy way for installing bgcflow_wrapper, step 2 sets the channel priorities to flexible. While running the bgcflow with an example dataset, it says exactly the...
> While running the bgcflow with an example dataset, it takes an extra long time for creating conda environments. The following errors were found after the execution of the run.....