Matt Einhorn
Matt Einhorn
There's some testing already with existing datasets. Namely we use [this dataset](https://gin.g-node.org/BrainGlobe/test-data/src/master/cellfinder) to test it [here](https://github.com/brainglobe/cellfinder/blob/7e02d024688b81e9640190a44f44112288d2e298/tests/core/test_unit/test_detect/test_filters/test_volume_filters/test_volume_filter.py#L185) end-to-end that the 2d/3d filters result in the same cells being detected. Similarly we...
I can certainly contribute some cfos data once I got it working with cellfinder well.
I finally got around to actually trying to optimize the cellfinder parameters so that I can detect actual cells, so that I can run it through the classification stage and...
For reference, I used `python -c "import pooch; pooch.make_registry('cellfinder', 'registry.txt')"`, as described [here](https://www.fatiando.org/pooch/latest/registry-files.html), on my pytorch test images and it generated this file. [registry.txt](https://github.com/user-attachments/files/15685696/registry.txt) I looked in pooch and it...
I do compress the tifs (`tifffile` supports compression options). And we can compress individual non image files with zip. However, for large files, it ultimately won't help that much, I...
Following up from https://github.com/brainglobe/cellfinder/pull/440. >Also, getting the test data from g-node is quite slow. Surprisingly so given it's supposed to host datasets. I assumed it'd be faster a bit after...
I created a napari issue for it https://github.com/napari/napari/issues/8287. I was able to replicate the example code in a clean napari only env without cellfinder, so this is not related to...
A better way, without these changes, is before you load your custom `style.kv` unload the builtin `style.kv`. I don't think this PR is a good idea, because with the change...
Ok, makes sense. Long term though, wouldn't you say that by default we should be using animation delays provided by the gif loader? Isn't that something you'd almost always want?...
I'd feel much more comfortable if there were tests testing these new options/properties. Because I'm not sure it's working correctly. I see I have some requested changes that I started...