Nico Matentzoglu
Nico Matentzoglu
@rays22 no need to act on this ticket, we will discuss it in the Friday meetings. The important thing is that you and Arwa spend 60-90 minutes each week to...
- rename abnormal phenotype or parts - right now not all intermediate classes (abnormal muscle of abdomen) are created, which seems sometimes a bit random. Maybe create if more than...
- remove _all_ logical axioms that don't conform not just EQs - FYPO classes have a lot of subclass of statements that are also broken.
- make QC check to detect normal phenotypes under abnormal ones - make issues for all SSPOs where this violation happens
Consider removing all axioms other than A sub B from SSPO? Would be a shame for correct partial EQs?
We should probably capture a new property in the OBO metadata, `baseiri` which describes overwrites the standard OBO purl system.
We will definitely not merge the HP MP source files so they can be correctly curated - but we should offer a well documented merged product to the community with...
Does the label "phenotype" capture the wild type (i.e. normal phenotypes) as well? If so, I think I am good with this.
PArt of the bigger issue to solve the specific vs generic relations. DIscuss in that context.
@JervenBolleman thanks for reaching out! We have long since given up on the idea of obo wide content negotiation support; many ontologies redirect to ols or some custom site and...