Nico Matentzoglu
Nico Matentzoglu
> I was more asking if Crohn disease should be a disease (http://purl.obolibrary.org/obo/MONDO_0005011) or a phenotype (http://purl.obolibrary.org/obo/HP_0100280) or are they referring to different things? In this case it is pretty...
I agree, this looks like a bug. I would say that for now, you will have to do (as you suggest) ``` robot \ template --template chebi_robot_template.tsv \ --prefix "chebi:...
[schema-prov.sssom.txt](https://github.com/user-attachments/files/16285729/schema-prov.sssom.txt) @pbuttigieg I fixed a few syntactic bugs. Would you like me to implement a sssom mapping registry for ODIS with mapping file validation etc?
Here is an example: https://github.com/mapping-commons/mh_mapping_initiative Mappings: https://github.com/mapping-commons/mh_mapping_initiative/tree/master/mappings Registry file: https://github.com/mapping-commons/mh_mapping_initiative/blob/master/registry.yml QC checking: https://github.com/mapping-commons/mh_mapping_initiative/blob/master/.github/workflows/qc.yml Its easy enough to set up, and I am happy to donate one to you!
> I'm assuming creating and maintaining mappings in the commons is open source and at no cost? 100%, we can move it to your own repo if you like!
@pbuttigieg I have created a minimal mapping registry for you here for inspection: https://github.com/matentzn/odis-mapping-commons Here is an example of a PR introducing a breaking change so you can see how...
> Is this most practical to implement as model annotations, (de)serializer configuration or as a transform (maybe different sides of a coin?). @tfliss I am not sure.. I think I...
I personally think (but not too strongly), that it's best to led OBO do the sorting into domain parts and stick with the OBO yaml approach. I now hesitate to...
Agree with all what @hoganwr said. As an aside: In 2022 I implemented a weird idea that allows people to simply import OBO registry metadata into their ontologies: https://github.com/information-artifact-ontology/ontology-metadata/pull/106 No...
Thank you! I guess using a relatively complex system of data classes and defaults as a blueprint to generate a json schema was always a little risky. I see you...