Ramon Massoni-Badosa

Hi @mojaveazure ! I would also like to make the Seurat object linked to our publication installable with a one-liner. Is there anyway I can do this? Thanks!

I will check this for the moment, thank you very much!

Indeed, if I copy the 3 functions (selectFeatures, linearModel and ggplot_features) from this repo to my code it works fine. However, I still get the same error when running the...

I cannot say much about the number of stacks or groups because it's the first time I use it :) In terms of ggsave, yes, if I increase the width...

Hey Sam, Sorry for the delayed response, I was on vacation. That's the code I'm using: ```{r} vln1

Nice! Thanks Sam :)

I got the same error using the docker container: ``` singularity run --bind $(pwd) docker://aertslab/pyscenic:0.12.1 pyscenic aucell \ > ${PROJECT_PATH}/data/processed_objects/pyscenic/${sample}_pyscenic_input.loom \ > ${PROJECT_PATH}/scripts/pySCENIC/tmp/${sample}_reg.csv \ > --output ${PROJECT_PATH}/scripts/pySCENIC/tmp/${sample}_pyscenic_output.loom.csv \ > -num_workers...

Hi @cbravo93, thanks for developing this amazing tool! I had a similar problem with ray and the export_pseudobulk function. In my case, I was not even able to initialize ray...

Hi presto team, thanks for developing this tool! I obtain a similar error: ``` > remotes::install_github('immunogenomics/presto') Downloading GitHub repo immunogenomics/presto@HEAD Error: Failed to install 'presto' from GitHub: Could not find...