marypiper

Hi Eduardo, Thanks for your quick response! I used the empirical method with multiple test correction (using the -gc option). The diffSplice command I used is: suppa.py diffSplice -m empirical...

Create exercise for some of the plots on ego object - have students do all basic plots

Change to 9am - 4pm for the workshop

The mouse genome for mm10 from Ensembl does not exist in igenome folder on o2

Also, we might want to check out the --writeMappings argument and the resulting SAM file

- [ ] 17. Visualization and functional analysis of genomic coordinates from NGS analyses (peak calls, etc.)

Maybe one for experimental design (expanding on what Sarah has) and one for the analysis: QC, integration, marker id, differential expression, traj analysis