Marwan Abdellah
Marwan Abdellah
Missing vertex group when using soft body to build soma. The issue has been tested for several neurons.
Please fix the error reported for this morphology: /data/morphologies/neurons/swc/barbour/1/D27B.CNG.swc ``` File "/home/abdellah/blender/bluebrain-blender-3.1/blender-neuromorphovis/3.1/scripts/addons/neuromorphovis/nmv/interface/ui/io/io_panel.py", line 313, in modal nmv.interface.analyze_morphology(morphology=nmv.interface.ui_morphology, context=context) File "/home/abdellah/blender/bluebrain-blender-3.1/blender-neuromorphovis/3.1/scripts/addons/neuromorphovis/nmv/interface/ui/analysis/analysis_panel_ops.py", line 333, in analyze_morphology item.apply_per_arbor_analysis_kernel(morphology=morphology, context=context) File "/home/abdellah/blender/bluebrain-blender-3.1/blender-neuromorphovis/3.1/scripts/addons/neuromorphovis/nmv/analysis/structs/analysis_item.py", line 348,...
To satisfy the mesh compression required to store efficient mesh models of the neurons, we should implement binary PLY mesh importer and exporter.
To be able to reconstruct a single neuronal morphology skeleton, we must connect the multi-partition graphs into a single connected graph. If the graph is composed of two partitions, then...
In order to be able to create full mouse brain vasculature datasets, we need a feature to split a single morphology object with multiple partitions into multiple morphology objects, where...
To ensure that all the small edges are covered, it would be better to add a flag to force conservative rasterization.
To provide a clean output, clean the soma mesh before exporting it.
To standardize the extracted skeleton, make sure that you translate the entire skeleton to the origin, based on the center of the segmented soma.
Incrementally, implement a neuron SWC exporter from the skeletonized dataset. The exporter should: 1. Initially, export all the __valid__ branches as dendrites, even including the spines. 2. Categorize the branches...
If the resolution given to the skeletonizer is relatively low with respect to the smallest sample in the neuron, we should try to find a relative metric with which we...