Martin Kim
Martin Kim
Hi, please use the [`convert_legacy_save`](https://docs.scvi-tools.org/en/stable/api/reference/scvi.model.MULTIVI.html#scvi.model.MULTIVI.convert_legacy_save) method for models saved prior to 0.15.
I think in the long term, it would be useful if our high-level API is framework-agnostic. Something like the following: ``` model = scvi.model.SCVI(adata, backend="jax") ``` or ``` model =...
> We thought about this but it requires matching features exactly, which might be hard. But we should continue to evaluate this option. Oh I see, yeah in that case...
Hi, if you're able to, could you please share the data you're using?
Hi, thank you for your question. This is because, based on our current defaults, the scVI encoder does not receive batch assignments ([`encode_covariates=False`](https://docs.scvi-tools.org/en/stable/api/reference/scvi.module.VAE.html)) such that changing the batch covariate will...
> I get that the model parameters for calculating the reference embedding aren't changed, but this should still allow for changing parameters specific for the query right? Right - since...
Good point - probably a good idea to point this out in the tutorials. I wasn't involved in writing this part of scvi-tools, so I'll also double check that this...
Hi, would you be able to paste the full traceback here? It's hard to tell right now where the error is being raised. Thanks!
@PierreBoyeau could you take a look at this please?
Is there an update on a fix for this?