Martin Steinegger

``` foldseek createdb example/ targetDB foldseek createdb example/ queryDB foldseek search queryDB targetDB aln tmpFolder -a foldseek aln2tmscore queryDB targetDB aln aln_tmscore foldseek createtsv queryDB targetDB aln_tmscore aln_tmscore.tsv ``` The...

@gezmi we added a structural viewer to the foldseek server. You can also get a static HTML using the binary using `--format-mode 3`

@jabard89 we updated the alphabet size of foldseek from 16 to 21. So the old database is not compatible anymore. Therefore I took it down.. We are currently recreating the...

We reuploaded all databases. Does this work now?

@Geraldene the following command should work. ``` foldseek easy-search queryFolder pdb aln tmp ```

We switched the hoster to cloudflare. if you update foldseek it should download it from the new source. I hope it resolves it.

11211 is the correct number. Please ignore the fasta file for now.

Thank you for reporting this. It should be fixed now. It was a wrong `dbtype` check.

yes, we did not update conda yet. But our statically compiled version should contain the fix.

You need to express your complex in a single a3m file. My answer to the following issue explains how the MSAs (a3ms) should be formatted: https://github.com/sokrypton/ColabFold/issues/76