Martin Steinegger

icon indicating a website link http://steineggerlab.com/ icon indicating an email [email protected]

icon company Seoul National University icon location Korea icon location Scientist and Engineer. Associate Professor at Seoul National University.

Results 234 comments of Martin Steinegger

List of accession numbers for contamination in NR

I will also upload a list of protein ids encoded on the short contamianted nucleotide contigs. I assume it might be useful for you to also remove these.

List of accession numbers for contamination in NR

@xgz-98 Conterminator automatically downloads the taxdump from the NCBI site. You only need to provide a fasta file and the respective mapping from identifier to taxid.

List of accession numbers for contamination in NR

@xgz-98 I have opened separate issue https://github.com/martin-steinegger/conterminator/issues/5

Results comprise mostly 'unknown' values

Might be solve by this pull request https://github.com/emepyc/Blast2lca/pull/5