Martin Steinegger

Sorry for the confusion. I meant "We only provide databases clustered by amino acid sequence.". E.g. the UniProt50 is clustered using MMseqs2 `mmseqs cluster afdb afdb50 tmp --min-seq-id 0.5 -c...

@gamcil could you update the foldseek html please?

@milot-mirdita @gamcil can this be closed?

We currently do not have proper rate limits setup, which we will in the next days. If you cannot access the API right now then you might be blocked. We...

Yes, as mentioned above we are working on proper rate limits. We do not send emails to institutions about the usage. However, I did contact one collaborator at Uni of...

(1) We did use MMseqs2 for clustering using `mmseqs cluster ... -c 0.9 --min-seq-id 0.5 --cluster-reassign 1`. We pick the highest plddt as rep. per cluster. (2) I think @milot-mirdita...

@wresch I agree. We will update the database soon.

@yeojingi thank you so much for helping with this issue. @Wangchentong It seems you're on your way to building a diverse, non-redundant protein dataset from the AFDB_Cluster. Here are some...

We normalize the TM-score's differently. The TM-score in the structure view is normalized by the query length. While the TM-score above is normalized by the avg. length of query and...

@mvankem could you please have a look at this?