Martin Steinegger comments

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                                            Martin Steinegger

Indexdb died error message when creating colabfold_envdb_202108_db with MMseqs

I assume your computer does not have enough RAM. How much RAM does your server has?

Indexdb died error message when creating colabfold_envdb_202108_db with MMseqs

**Online searches:** Our Colabfold server has ~760GB RAM and keeps full database and index in memory. **Batch searches:** To perform a batch search you require less memory. But its still...

Batch mode (skipping all sequences) I switched to older 1.2 and 1.2 works

Thank you for reporting it. Should be fixed now.

Index error/ List Index out of range in the Display 3D structure

This should be fixed now. If you still encounter the issue please share you input sequence and mmcif file.

Index error/ List Index out of range in the Display 3D structure

This should be fixed now.

Problems with compressing results in AlphaFold2_batch and when checking that a job is completed

Thank you for reporting this and the fix! Also you are right, we stored zip files before and now the files are unzipped. @konstin is currently working on this issue.

Alphafold2 multimer prediction GPU memory related error on google colab pro

I assume the GPU you got from Colab does not have enough memory to predict the structure.

IndexError: list index out of range

Could you please post your input sequence and parameter?

Error in specific run

I could just run it without an error. Did you try a factory reset? Here is the zip: https://www.dropbox.com/t/Lb76vfDt2bCHcHbf

Error in specific run

Yes, I think the node you get from google has too little RAM. You could consider updating to Google Pro, which increases your chance to get a node with more...