marsdenl

[Bug] Isse with running Baysor segmentation on some but not all patches

27

Hey Quentin, I've been trying to use the CLI workflow to segment a MERSCOPE dataset. After successfully creating patches I see that the formatting for the transcript.csv file was quite...

MERSCOPE Default Config

9

Hey @dcjones, thank you for this great tool. It works quite well on my MERSCOPE samples but I wanted to tweak it a bit for further optimisation. My first segmentation...

Hey there, Thanks again for providing this fantastic atlas. I've been trying to load the core scArches model using the default README steps but am struggling to actually load the...

Hi there, Apologies if this has been submitted previously but I was just wondering if it was possible to run CSIDE without running RCTD prior to that. I have already-annotated...